Gene sequence-based criteria for identification of new rickettsia isolates and description of Rickettsia heilongjiangensis sp. nov

Details

Serval ID
serval:BIB_C8452523F5AD
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Gene sequence-based criteria for identification of new rickettsia isolates and description of Rickettsia heilongjiangensis sp. nov
Journal
Journal of Clinical Microbiology
Author(s)
Fournier  P. E., Dumler  J. S., Greub  G., Zhang  J., Wu  Y., Raoult  D.
ISSN
0095-1137 (Print)
Publication state
Published
Issued date
12/2003
Volume
41
Number
12
Pages
5456-65
Notes
Journal Article --- Old month value: Dec
Abstract
We propose genetic guidelines for the classification of rickettsial isolates at the genus, group, and species levels by using sequences of the 16S rRNA (rrs) gene and four protein-coding genes, the gltA, ompA, and ompB genes and gene D. To be classified as a member of the genus Rickettsia, an isolate should exhibit degrees of rrs and gltA homology with any of the 20 Rickettsia species studied of >/=98.1 and >/=86.5%, respectively. A member of the typhus group should fulfill at least two of the following four criteria: pairwise nucleotide sequence homologies with rrs, gltA, ompB, and gene D of either Rickettsia typhi or Rickettsia prowazekii of >/=99.4, >/=96.6, >/=92.4, and >/=91.6%, respectively. A member of the spotted fever group should either possess the ompA gene or fulfill at least two of the following four criteria: pairwise nucleotide sequence homologies with rrs, gltA, ompB, and gene D of any member of this group of >/=98.8, >/=92.7, >/=85.8, and >/=82.2%, respectively. The existence of a distinct "ancestral" group should be questioned. To be classified as a new Rickettsia species, an isolate should not exhibit more than one of the following degrees of nucleotide similarity with the most homologous validated species: >/=99.8 and >/=99.9% for the rrs and gltA genes, respectively, and, when amplifiable, >/=98.8, >/=99.2, and >/=99.3% for the ompA and ompB genes and gene D, respectively. By use of our classification scheme, "Rickettsia heilongjiangii" belongs to a new species for which we officially propose the name Rickettsia heilongjiangensis sp. nov.
Keywords
DNA, Ribosomal/genetics Genes, Bacterial/*genetics Genotype Humans Phylogeny Polymerase Chain Reaction/methods RNA, Ribosomal, 16S/genetics Rickettsia/classification/*genetics/isolation & purification Rickettsia Infections/classification/diagnosis/microbiology Rocky Mountain Spotted Fever/microbiology
Pubmed
Web of science
Open Access
Yes
Create date
25/01/2008 15:27
Last modification date
20/08/2019 16:43
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