Gene sequence-based criteria for identification of new rickettsia isolates and description of Rickettsia heilongjiangensis sp. nov

Détails

ID Serval
serval:BIB_C8452523F5AD
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Gene sequence-based criteria for identification of new rickettsia isolates and description of Rickettsia heilongjiangensis sp. nov
Périodique
Journal of Clinical Microbiology
Auteur⸱e⸱s
Fournier  P. E., Dumler  J. S., Greub  G., Zhang  J., Wu  Y., Raoult  D.
ISSN
0095-1137 (Print)
Statut éditorial
Publié
Date de publication
12/2003
Volume
41
Numéro
12
Pages
5456-65
Notes
Journal Article --- Old month value: Dec
Résumé
We propose genetic guidelines for the classification of rickettsial isolates at the genus, group, and species levels by using sequences of the 16S rRNA (rrs) gene and four protein-coding genes, the gltA, ompA, and ompB genes and gene D. To be classified as a member of the genus Rickettsia, an isolate should exhibit degrees of rrs and gltA homology with any of the 20 Rickettsia species studied of >/=98.1 and >/=86.5%, respectively. A member of the typhus group should fulfill at least two of the following four criteria: pairwise nucleotide sequence homologies with rrs, gltA, ompB, and gene D of either Rickettsia typhi or Rickettsia prowazekii of >/=99.4, >/=96.6, >/=92.4, and >/=91.6%, respectively. A member of the spotted fever group should either possess the ompA gene or fulfill at least two of the following four criteria: pairwise nucleotide sequence homologies with rrs, gltA, ompB, and gene D of any member of this group of >/=98.8, >/=92.7, >/=85.8, and >/=82.2%, respectively. The existence of a distinct "ancestral" group should be questioned. To be classified as a new Rickettsia species, an isolate should not exhibit more than one of the following degrees of nucleotide similarity with the most homologous validated species: >/=99.8 and >/=99.9% for the rrs and gltA genes, respectively, and, when amplifiable, >/=98.8, >/=99.2, and >/=99.3% for the ompA and ompB genes and gene D, respectively. By use of our classification scheme, "Rickettsia heilongjiangii" belongs to a new species for which we officially propose the name Rickettsia heilongjiangensis sp. nov.
Mots-clé
DNA, Ribosomal/genetics Genes, Bacterial/*genetics Genotype Humans Phylogeny Polymerase Chain Reaction/methods RNA, Ribosomal, 16S/genetics Rickettsia/classification/*genetics/isolation & purification Rickettsia Infections/classification/diagnosis/microbiology Rocky Mountain Spotted Fever/microbiology
Pubmed
Web of science
Open Access
Oui
Création de la notice
25/01/2008 14:27
Dernière modification de la notice
20/08/2019 15:43
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