Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection.

Details

Serval ID
serval:BIB_BB49B254C104
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection.
Journal
The Journal of infectious diseases
Author(s)
Zeeb M., Frischknecht P., Huber M., Schenkel C.D., Neumann K., Leeman C., Notter J., Rauch A., Stöckle M., Cavassini M., Bernasconi E., Braun D.L., Günthard H.F., Metzner K.J., Kouyos R.D.
ISSN
1537-6613 (Electronic)
ISSN-L
0022-1899
Publication state
In Press
Peer-reviewed
Oui
Language
english
Notes
Publication types: Journal Article
Publication Status: aheadofprint
Abstract
HIV-1 RNA genetic diversity predicts time since infection which is important for clinical care and research. It's unclear, however, whether proviral DNA genetic diversity sampled under suppressive antiretroviral therapy can be used for this purpose. We tested whether proviral genetic diversity from NGS sequences predicts time since infection and recency in 221 people with HIV-1 with known infection time. Proviral diversity was significantly associated with time since infection (p<5*10-07, R2 up to 25%) and predictive of treatment initiation during recent infection (AUC-ROC up to 0.85). This shows the utility of proviral genetic diversity as a proxy for time since infection.
Keywords
Hiv-1, infection recency, next-generation sequencing, proviral diversity, time since infection, HIV-1
Pubmed
Web of science
Open Access
Yes
Create date
22/03/2024 14:20
Last modification date
07/05/2024 7:17
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