Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection.

Détails

ID Serval
serval:BIB_BB49B254C104
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection.
Périodique
The Journal of infectious diseases
Auteur⸱e⸱s
Zeeb M., Frischknecht P., Huber M., Schenkel C.D., Neumann K., Leeman C., Notter J., Rauch A., Stöckle M., Cavassini M., Bernasconi E., Braun D.L., Günthard H.F., Metzner K.J., Kouyos R.D.
ISSN
1537-6613 (Electronic)
ISSN-L
0022-1899
Statut éditorial
In Press
Peer-reviewed
Oui
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: aheadofprint
Résumé
HIV-1 RNA genetic diversity predicts time since infection which is important for clinical care and research. It's unclear, however, whether proviral DNA genetic diversity sampled under suppressive antiretroviral therapy can be used for this purpose. We tested whether proviral genetic diversity from NGS sequences predicts time since infection and recency in 221 people with HIV-1 with known infection time. Proviral diversity was significantly associated with time since infection (p<5*10-07, R2 up to 25%) and predictive of treatment initiation during recent infection (AUC-ROC up to 0.85). This shows the utility of proviral genetic diversity as a proxy for time since infection.
Mots-clé
Hiv-1, infection recency, next-generation sequencing, proviral diversity, time since infection, HIV-1
Pubmed
Web of science
Open Access
Oui
Création de la notice
22/03/2024 14:20
Dernière modification de la notice
07/05/2024 7:17
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