MRCZ - A file format for cryo-TEM data with fast compression.
Details
Serval ID
serval:BIB_B6AB8E71C5DA
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
MRCZ - A file format for cryo-TEM data with fast compression.
Journal
Journal of structural biology
ISSN
1095-8657 (Electronic)
ISSN-L
1047-8477
Publication state
Published
Issued date
03/2018
Peer-reviewed
Oui
Volume
201
Number
3
Pages
252-257
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Publication Status: ppublish
Abstract
The introduction of fast CMOS detectors is moving the field of transmission electron microscopy into the computer science field of big data. Automated data pipelines control the instrument and initial processing steps which imposes more onerous data transfer and archiving requirements. Here we conduct a technical demonstration whereby storage and read/write times are improved 10× at a dose rate of 1 e <sup>-</sup> /pix/frame for data from a Gatan K2 direct-detection device by combination of integer decimation and lossless compression. The example project is hosted at github.com/em-MRCZ and released under the BSD license.
Keywords
Cryoelectron Microscopy, Data Compression/methods, Image Processing, Computer-Assisted, Microscopy, Electron, Transmission, Software, Data management, File archiving, Lossless compression
Pubmed
Web of science
Open Access
Yes
Create date
09/06/2023 15:02
Last modification date
08/07/2023 5:50