MRCZ - A file format for cryo-TEM data with fast compression.
Détails
ID Serval
serval:BIB_B6AB8E71C5DA
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
MRCZ - A file format for cryo-TEM data with fast compression.
Périodique
Journal of structural biology
ISSN
1095-8657 (Electronic)
ISSN-L
1047-8477
Statut éditorial
Publié
Date de publication
03/2018
Peer-reviewed
Oui
Volume
201
Numéro
3
Pages
252-257
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Publication Status: ppublish
Résumé
The introduction of fast CMOS detectors is moving the field of transmission electron microscopy into the computer science field of big data. Automated data pipelines control the instrument and initial processing steps which imposes more onerous data transfer and archiving requirements. Here we conduct a technical demonstration whereby storage and read/write times are improved 10× at a dose rate of 1 e <sup>-</sup> /pix/frame for data from a Gatan K2 direct-detection device by combination of integer decimation and lossless compression. The example project is hosted at github.com/em-MRCZ and released under the BSD license.
Mots-clé
Cryoelectron Microscopy, Data Compression/methods, Image Processing, Computer-Assisted, Microscopy, Electron, Transmission, Software, Data management, File archiving, Lossless compression
Pubmed
Web of science
Open Access
Oui
Création de la notice
09/06/2023 15:02
Dernière modification de la notice
08/07/2023 5:50