Robust thalamic nuclei segmentation from T1-weighted MRI using polynomial intensity transformation.

Details

Serval ID
serval:BIB_9604D6F4D5B0
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Robust thalamic nuclei segmentation from T1-weighted MRI using polynomial intensity transformation.
Journal
Brain structure & function
Author(s)
Vidal J.P., Danet L., Péran P., Pariente J., Bach Cuadra M., Zahr N.M., Barbeau E.J., Saranathan M.
ISSN
1863-2661 (Electronic)
ISSN-L
1863-2653
Publication state
In Press
Peer-reviewed
Oui
Language
english
Notes
Publication types: Journal Article
Publication Status: aheadofprint
Abstract
Accurate segmentation of thalamic nuclei, crucial for understanding their role in healthy cognition and in pathologies, is challenging to achieve on standard T1-weighted (T1w) magnetic resonance imaging (MRI) due to poor image contrast. White-matter-nulled (WMn) MRI sequences improve intrathalamic contrast but are not part of clinical protocols or extant databases. In this study, we introduce histogram-based polynomial synthesis (HIPS), a fast preprocessing transform step that synthesizes WMn-like image contrast from standard T1w MRI using a polynomial approximation for intensity transformation. HIPS was incorporated into THalamus Optimized Multi-Atlas Segmentation (THOMAS) pipeline, a method developed and optimized for WMn MRI. HIPS-THOMAS was compared to a convolutional neural network (CNN)-based segmentation method and THOMAS modified for the use of T1w images (T1w-THOMAS). The robustness and accuracy of the three methods were tested across different image contrasts (MPRAGE, SPGR, and MP2RAGE), scanner manufacturers (PHILIPS, GE, and Siemens), and field strengths (3 T and 7 T). HIPS-transformed images improved intra-thalamic contrast and thalamic boundaries, and HIPS-THOMAS yielded significantly higher mean Dice coefficients and reduced volume errors compared to both the CNN method and T1w-THOMAS. Finally, all three methods were compared using the frequently travelling human phantom MRI dataset for inter- and intra-scanner variability, with HIPS displaying the least inter-scanner variability and performing comparably with T1w-THOMAS for intra-scanner variability. In conclusion, our findings highlight the efficacy and robustness of HIPS in enhancing thalamic nuclei segmentation from standard T1w MRI.
Keywords
Structural imaging, THOMAS, Thalamic nuclei segmentation, Thalamus
Pubmed
Web of science
Create date
02/04/2024 10:19
Last modification date
13/04/2024 7:05
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