Robust thalamic nuclei segmentation from T1-weighted MRI using polynomial intensity transformation.

Détails

ID Serval
serval:BIB_9604D6F4D5B0
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Robust thalamic nuclei segmentation from T1-weighted MRI using polynomial intensity transformation.
Périodique
Brain structure & function
Auteur⸱e⸱s
Vidal J.P., Danet L., Péran P., Pariente J., Bach Cuadra M., Zahr N.M., Barbeau E.J., Saranathan M.
ISSN
1863-2661 (Electronic)
ISSN-L
1863-2653
Statut éditorial
In Press
Peer-reviewed
Oui
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: aheadofprint
Résumé
Accurate segmentation of thalamic nuclei, crucial for understanding their role in healthy cognition and in pathologies, is challenging to achieve on standard T1-weighted (T1w) magnetic resonance imaging (MRI) due to poor image contrast. White-matter-nulled (WMn) MRI sequences improve intrathalamic contrast but are not part of clinical protocols or extant databases. In this study, we introduce histogram-based polynomial synthesis (HIPS), a fast preprocessing transform step that synthesizes WMn-like image contrast from standard T1w MRI using a polynomial approximation for intensity transformation. HIPS was incorporated into THalamus Optimized Multi-Atlas Segmentation (THOMAS) pipeline, a method developed and optimized for WMn MRI. HIPS-THOMAS was compared to a convolutional neural network (CNN)-based segmentation method and THOMAS modified for the use of T1w images (T1w-THOMAS). The robustness and accuracy of the three methods were tested across different image contrasts (MPRAGE, SPGR, and MP2RAGE), scanner manufacturers (PHILIPS, GE, and Siemens), and field strengths (3 T and 7 T). HIPS-transformed images improved intra-thalamic contrast and thalamic boundaries, and HIPS-THOMAS yielded significantly higher mean Dice coefficients and reduced volume errors compared to both the CNN method and T1w-THOMAS. Finally, all three methods were compared using the frequently travelling human phantom MRI dataset for inter- and intra-scanner variability, with HIPS displaying the least inter-scanner variability and performing comparably with T1w-THOMAS for intra-scanner variability. In conclusion, our findings highlight the efficacy and robustness of HIPS in enhancing thalamic nuclei segmentation from standard T1w MRI.
Mots-clé
Structural imaging, THOMAS, Thalamic nuclei segmentation, Thalamus
Pubmed
Web of science
Création de la notice
02/04/2024 10:19
Dernière modification de la notice
13/04/2024 7:05
Données d'usage