BactEXTRACT: an R Shiny app to quickly extract, plot and analyse bacterial growth and gene expression data.

Details

Serval ID
serval:BIB_8C35F63DFBAE
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
BactEXTRACT: an R Shiny app to quickly extract, plot and analyse bacterial growth and gene expression data.
Journal
Access microbiology
Author(s)
Dénéréaz J., Veening J.W.
ISSN
2516-8290 (Electronic)
ISSN-L
2516-8290
Publication state
Published
Issued date
2024
Peer-reviewed
Oui
Volume
6
Number
1
Language
english
Notes
Publication types: Journal Article
Publication Status: epublish
Abstract
To streamline the analysis and visualization of bacterial growth and gene expression data obtained by microtitre plate readers, we developed BactEXTRACT, an intuitive, easy-to-use R Shiny application. BactEXTRACT simplifies the transition from raw optical density, fluorescence and luminescence measurements to publication-ready plots. This package offers a user-friendly interface that reduces the complexity involved in growth curve and gene expression analysis and is generally applicable. BactEXTRACT is available at https://veeninglab.com/bactextract.
Keywords
RShiny, bacterial growth, high-throughput data analysis, microtitre plate reader
Pubmed
Open Access
Yes
Create date
20/02/2024 16:24
Last modification date
21/02/2024 8:17
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