BactEXTRACT: an R Shiny app to quickly extract, plot and analyse bacterial growth and gene expression data.

Détails

ID Serval
serval:BIB_8C35F63DFBAE
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
BactEXTRACT: an R Shiny app to quickly extract, plot and analyse bacterial growth and gene expression data.
Périodique
Access microbiology
Auteur⸱e⸱s
Dénéréaz J., Veening J.W.
ISSN
2516-8290 (Electronic)
ISSN-L
2516-8290
Statut éditorial
Publié
Date de publication
2024
Peer-reviewed
Oui
Volume
6
Numéro
1
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: epublish
Résumé
To streamline the analysis and visualization of bacterial growth and gene expression data obtained by microtitre plate readers, we developed BactEXTRACT, an intuitive, easy-to-use R Shiny application. BactEXTRACT simplifies the transition from raw optical density, fluorescence and luminescence measurements to publication-ready plots. This package offers a user-friendly interface that reduces the complexity involved in growth curve and gene expression analysis and is generally applicable. BactEXTRACT is available at https://veeninglab.com/bactextract.
Mots-clé
RShiny, bacterial growth, high-throughput data analysis, microtitre plate reader
Pubmed
Open Access
Oui
Création de la notice
20/02/2024 16:24
Dernière modification de la notice
21/02/2024 8:17
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