Transcription organizes euchromatin via microphase separation.

Details

Serval ID
serval:BIB_6C31278C4B11
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Transcription organizes euchromatin via microphase separation.
Journal
Nature communications
Author(s)
Hilbert L., Sato Y., Kuznetsova K., Bianucci T., Kimura H., Jülicher F., Honigmann A., Zaburdaev V., Vastenhouw N.L.
ISSN
2041-1723 (Electronic)
ISSN-L
2041-1723
Publication state
Published
Issued date
01/03/2021
Peer-reviewed
Oui
Volume
12
Number
1
Pages
1360
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: epublish
Abstract
In eukaryotes, DNA is packed inside the cell nucleus in the form of chromatin, which consists of DNA, proteins such as histones, and RNA. Euchromatin, which is permissive for transcription, is spatially organized into transcriptionally inactive domains interspersed with pockets of transcriptional activity. While transcription and RNA have been implicated in euchromatin organization, it remains unclear how their interplay forms and maintains transcription pockets. Here we combine theory and experiment to analyze the dynamics of euchromatin organization as pluripotent zebrafish cells exit mitosis and begin transcription. We show that accumulation of RNA induces formation of transcription pockets which displace transcriptionally inactive chromatin. We propose that the accumulating RNA recruits RNA-binding proteins that together tend to separate from transcriptionally inactive euchromatin. Full phase separation is prevented because RNA remains tethered to transcribed euchromatin through RNA polymerases. Instead, smaller scale microphases emerge that do not grow further and form the typical pattern of euchromatin organization.
Keywords
Animals, Computer Simulation, Embryo, Nonmammalian/metabolism, Emulsions/chemistry, Euchromatin/genetics, Mitosis/genetics, RNA/metabolism, RNA Stability, Transcription, Genetic, Zebrafish/embryology
Pubmed
Web of science
Open Access
Yes
Create date
08/03/2021 15:25
Last modification date
20/02/2024 8:18
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