Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia.
Details
Serval ID
serval:BIB_332F10D9B493
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia.
Journal
Biochimica et biophysica acta. Biomembranes
ISSN
1879-2642 (Electronic)
ISSN-L
0005-2736
Publication state
Published
Issued date
01/07/2021
Peer-reviewed
Oui
Volume
1863
Number
7
Pages
183607
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Publication Status: ppublish
Abstract
Colicins are bacterial toxins targeting Gram-negative bacteria, including E. coli and related Enterobacteriaceae strains. Some colicins form ion-gated pores in the inner membrane of attacked bacteria that are lethal to their target. Colicin Ia was the first pore-forming E. coli toxin, for which a high-resolution structure of the monomeric full-length protein was determined. It is so far also the only colicin, for which a low-resolution structure of its membrane-inserted pore was reported by negative-stain electron microscopy. Resolving this structure at the atomic level would allow an understanding of the mechanism of toxin pore formation. Here, we report an observation that we made during an attempt to determine the Colicin Ia pore structure at atomic resolution. Colicin Ia was natively expressed by mitomycin-C induction under a native SOS promotor and purified following published protocols. The visual appearance in the electron microscope of negatively stained preparations and the lattice parameters of 2D crystals obtained from the material were highly similar to those reported earlier resulting from the same purification protocol. However, a higher-resolution structural analysis revealed that the protein is Dps (DNA-binding protein from starved cells), a dodecameric E. coli protein. This finding suggests that the previously reported low-resolution structure of a "Colicin Ia oligomeric pore" actually shows Dps.
Keywords
Colicins/chemistry, Colicins/genetics, Colicins/metabolism, Cryoelectron Microscopy, Crystallization, DNA-Binding Proteins/chemistry, Escherichia coli/metabolism, Gene Expression/drug effects, Mitomycin/pharmacology, Protein Structure, Quaternary, Recombinant Proteins/biosynthesis, Recombinant Proteins/isolation & purification, 2D crystallization, Colicin Ia, Cryo-electron microscopy, Mitomycin-C, Protein contamination, Protein purification, SOS response
Pubmed
Web of science
Open Access
Yes
Create date
09/06/2023 15:02
Last modification date
08/07/2023 5:50