Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia.
Détails
ID Serval
serval:BIB_332F10D9B493
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia.
Périodique
Biochimica et biophysica acta. Biomembranes
ISSN
1879-2642 (Electronic)
ISSN-L
0005-2736
Statut éditorial
Publié
Date de publication
01/07/2021
Peer-reviewed
Oui
Volume
1863
Numéro
7
Pages
183607
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Publication Status: ppublish
Résumé
Colicins are bacterial toxins targeting Gram-negative bacteria, including E. coli and related Enterobacteriaceae strains. Some colicins form ion-gated pores in the inner membrane of attacked bacteria that are lethal to their target. Colicin Ia was the first pore-forming E. coli toxin, for which a high-resolution structure of the monomeric full-length protein was determined. It is so far also the only colicin, for which a low-resolution structure of its membrane-inserted pore was reported by negative-stain electron microscopy. Resolving this structure at the atomic level would allow an understanding of the mechanism of toxin pore formation. Here, we report an observation that we made during an attempt to determine the Colicin Ia pore structure at atomic resolution. Colicin Ia was natively expressed by mitomycin-C induction under a native SOS promotor and purified following published protocols. The visual appearance in the electron microscope of negatively stained preparations and the lattice parameters of 2D crystals obtained from the material were highly similar to those reported earlier resulting from the same purification protocol. However, a higher-resolution structural analysis revealed that the protein is Dps (DNA-binding protein from starved cells), a dodecameric E. coli protein. This finding suggests that the previously reported low-resolution structure of a "Colicin Ia oligomeric pore" actually shows Dps.
Mots-clé
Colicins/chemistry, Colicins/genetics, Colicins/metabolism, Cryoelectron Microscopy, Crystallization, DNA-Binding Proteins/chemistry, Escherichia coli/metabolism, Gene Expression/drug effects, Mitomycin/pharmacology, Protein Structure, Quaternary, Recombinant Proteins/biosynthesis, Recombinant Proteins/isolation & purification, 2D crystallization, Colicin Ia, Cryo-electron microscopy, Mitomycin-C, Protein contamination, Protein purification, SOS response
Pubmed
Web of science
Open Access
Oui
Création de la notice
09/06/2023 15:02
Dernière modification de la notice
08/07/2023 5:50