Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA.

Details

Serval ID
serval:BIB_30F14CE66460
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA.
Journal
Journal of Molecular Biology
Author(s)
Bednar J., Furrer P., Katritch V., Stasiak A.Z., Dubochet J., Stasiak A.
ISSN
0022-2836[print], 0022-2836[linking]
Publication state
Published
Issued date
12/1995
Volume
254
Number
4
Pages
579-594
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't Publication Status: ppublish
Abstract
Axial deflection of DNA molecules in solution results from thermal motion and intrinsic curvature related to the DNA sequence. In order to measure directly the contribution of thermal motion we constructed intrinsically straight DNA molecules and measured their persistence length by cryo-electron microscopy. The persistence length of such intrinsically straight DNA molecules suspended in thin layers of cryo-vitrified solutions is about 80 nm. In order to test our experimental approach, we measured the apparent persistence length of DNA molecules with natural "random" sequences. The result of about 45 nm is consistent with the generally accepted value of the apparent persistence length of natural DNA sequences. By comparing the apparent persistence length to intrinsically straight DNA with that of natural DNA, it is possible to determine both the dynamic and the static contributions to the apparent persistence length.
Keywords
Base Sequence, DNA/chemistry, Freezing, Image Processing, Computer-Assisted/methods, Microscopy, Electron/methods, Models, Chemical, Models, Molecular, Molecular Sequence Data, Monte Carlo Method, Nucleic Acid Conformation
Pubmed
Web of science
Create date
24/01/2008 11:25
Last modification date
20/08/2019 14:15
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