Translation is required for miRNA-dependent decay of endogenous transcripts.

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Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_1E9949CC6BEE
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Translation is required for miRNA-dependent decay of endogenous transcripts.
Journal
The EMBO journal
Author(s)
Biasini A., Abdulkarim B., de Pretis S., Tan J.Y., Arora R., Wischnewski H., Dreos R., Pelizzola M., Ciaudo C., Marques A.C.
ISSN
1460-2075 (Electronic)
ISSN-L
0261-4189
Publication state
Published
Issued date
01/02/2021
Peer-reviewed
Oui
Volume
40
Number
3
Pages
e104569
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Abstract
Post-transcriptional repression of gene expression by miRNAs occurs through transcript destabilization or translation inhibition. mRNA decay is known to account for most miRNA-dependent repression. However, because transcript decay occurs co-translationally, whether target translation is a requirement for miRNA-dependent transcript destabilization remains unknown. To decouple these two molecular processes, we used cytosolic long noncoding RNAs (lncRNAs) as models for endogenous transcripts that are not translated. We show that, despite interacting with the miRNA-loaded RNA-induced silencing complex, the steady-state abundance and decay rates of these transcripts are minimally affected by miRNA loss. To further validate the apparent requirement of translation for miRNA-dependent decay, we fused two lncRNA candidates to the 3'-end of a protein-coding gene reporter and found this results in their miRNA-dependent destabilization. Further analysis revealed that the few natural lncRNAs whose levels are regulated by miRNAs in mESCs tend to associate with translating ribosomes, and possibly represent misannotated micropeptides, further substantiating the necessity of target translation for miRNA-dependent transcript decay. In summary, our analyses suggest that translation is required for miRNA-dependent transcript destabilization, and demonstrate that the levels of coding and noncoding transcripts are differently affected by miRNAs.
Keywords
Animals, Artificial Gene Fusion, Cell Line, Gene Expression Regulation, Genes, Reporter, High-Throughput Nucleotide Sequencing, Mice, MicroRNAs/genetics, Mouse Embryonic Stem Cells/cytology, Mouse Embryonic Stem Cells/metabolism, Protein Biosynthesis, RNA Stability, RNA, Long Noncoding/genetics, RNA, Messenger/chemistry, RNA, Messenger/metabolism, Ribosomes/metabolism, Sequence Analysis, RNA, Dicer knockout mESC, RNA metabolic labelling, long noncoding RNAs, miRNA, translation
Pubmed
Web of science
Open Access
Yes
Create date
22/12/2020 11:14
Last modification date
23/01/2024 7:21
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