3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.

Détails

ID Serval
serval:BIB_32052
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
Périodique
Nucleic Acids Research
Auteur⸱e⸱s
Poirot O., Suhre K., Abergel C., O'Toole E., Notredame C.
ISSN
1362-4962[electronic]
Statut éditorial
Publié
Date de publication
2004
Volume
32
Numéro
Web Server issue
Pages
W37-W40
Langue
anglais
Notes
Publication types: Journal Article
Résumé
This paper presents 3DCoffee@igs, a web-based tool dedicated to the computation of high-quality multiple sequence alignments (MSAs). 3D-Coffee makes it possible to mix protein sequences and structures in order to increase the accuracy of the alignments. Structures can be either provided as PDB identifiers or directly uploaded into the server. Given a set of sequences and structures, pairs of structures are aligned with SAP while sequence-structure pairs are aligned with Fugue. The resulting collection of pairwise alignments is then combined into an MSA with the T-Coffee algorithm. The server and its documentation are available from http://igs-server.cnrs-mrs.fr/Tcoffee/.
Mots-clé
Internet, Proteins/chemistry, Sequence Alignment, Sequence Analysis, Protein, Software
Pubmed
Web of science
Open Access
Oui
Création de la notice
19/11/2007 10:01
Dernière modification de la notice
20/08/2019 13:17
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