3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
Details
Serval ID
serval:BIB_32052
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
Journal
Nucleic Acids Research
ISSN
1362-4962[electronic]
Publication state
Published
Issued date
2004
Volume
32
Number
Web Server issue
Pages
W37-W40
Language
english
Notes
Publication types: Journal Article
Abstract
This paper presents 3DCoffee@igs, a web-based tool dedicated to the computation of high-quality multiple sequence alignments (MSAs). 3D-Coffee makes it possible to mix protein sequences and structures in order to increase the accuracy of the alignments. Structures can be either provided as PDB identifiers or directly uploaded into the server. Given a set of sequences and structures, pairs of structures are aligned with SAP while sequence-structure pairs are aligned with Fugue. The resulting collection of pairwise alignments is then combined into an MSA with the T-Coffee algorithm. The server and its documentation are available from http://igs-server.cnrs-mrs.fr/Tcoffee/.
Keywords
Internet, Proteins/chemistry, Sequence Alignment, Sequence Analysis, Protein, Software
OAI-PMH
Pubmed
Web of science
Open Access
Yes
Create date
19/11/2007 11:01
Last modification date
20/08/2019 14:17