A novel set of DIP-STR markers for improved analysis of challenging DNA mixtures.

Details

Serval ID
serval:BIB_FE077B1E4AFD
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
A novel set of DIP-STR markers for improved analysis of challenging DNA mixtures.
Journal
Forensic science international. Genetics
Author(s)
Oldoni F., Castella V., Hall D.
ISSN
1878-0326 (Electronic)
ISSN-L
1872-4973
Publication state
Published
Issued date
11/2015
Peer-reviewed
Oui
Volume
19
Pages
156-164
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish

Abstract
Currently available molecular biology tools allow forensic scientists to characterize DNA evidence found at crime scenes for a large variety of samples, including those of limited quantity and quality, and achieve high levels of individualization. Yet, standard forensic markers provide limited or no results when applied to mixed DNA samples where the contributors are present in very different proportions (unbalanced DNA mixtures). This becomes an issue mostly for the analysis of trace samples collected on the victim or from touched objects. To this end, we recently proposed an innovative type of genetic marker, named DIP-STR that relies on pairing deletion/insertion polymorphisms (DIP) with standard short tandem repeats (STR). This novel compound marker allows detection of the minor DNA contributor in a DNA mixture of any gender and cellular origin with unprecedented resolution (beyond a DNA ratio of 1:1000). To provide a novel analytical tool useful in practice to common forensic laboratories, this article describes the first set of 10 DIP-STR markers selected according to forensic technical standards. The novel DIP-STR regions are short (between 146 and 271 bp), include only highly polymorphic tri-, tetra- and pentanucleotide tandem repeats and are located on different chromosomes or chromosomal arms to provide statistically independent results. This novel set of DIP-STR can target the amplification of 0.03-0.1 ng of DNA when mixed with a 1000-fold excess of major DNA. DIP-STR relative allele frequencies are estimated based on a survey of 103 Swiss individuals. Finally, this study provides an estimate of the occurrence of informative alleles and a calculation of the corresponding random match probability of the detected minor DIP-STR genotype assessed across 10,506 pairwise conceptual mixtures.

Keywords
DNA/genetics, Forensic Genetics, Gene Frequency, Genetic Markers, Haplotypes, Humans, Limit of Detection, Microsatellite Repeats/genetics, Polymorphism, Genetic
Pubmed
Web of science
Create date
03/08/2015 10:01
Last modification date
20/08/2019 17:28
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