The Immune Signatures data resource, a compendium of systems vaccinology datasets.

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Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_FDA7293F77B9
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
The Immune Signatures data resource, a compendium of systems vaccinology datasets.
Journal
Scientific data
Author(s)
Diray-Arce J., Miller HER, Henrich E., Gerritsen B., Mulè M.P., Fourati S., Gygi J., Hagan T., Tomalin L., Rychkov D., Kazmin D., Chawla D.G., Meng H., Dunn P., Campbell J., Sarwal M., Tsang J.S., Levy O., Pulendran B., Sekaly R., Floratos A., Gottardo R., Kleinstein S.H., Suárez-Fariñas M.
Working group(s)
Human Immunology Project Consortium (HIPC)
Contributor(s)
Deckhut-Augustine A., Gottardo R., Haddad E.K., Hafler D.A., Harris E., Farber D., Levy O., McElrath J., Montgomery R.R., Peters B., Rahman A., Reed E.F., Rouphael N., Fernandez-Sesma A., Sette A., Stuart K., Togias A., Tsang J.S.
ISSN
2052-4463 (Electronic)
ISSN-L
2052-4463
Publication state
Published
Issued date
20/10/2022
Peer-reviewed
Oui
Volume
9
Number
1
Pages
635
Language
english
Notes
Publication types: Dataset ; Journal Article
Publication Status: epublish
Abstract
Vaccines are among the most cost-effective public health interventions for preventing infection-induced morbidity and mortality, yet much remains to be learned regarding the mechanisms by which vaccines protect. Systems immunology combines traditional immunology with modern 'omic profiling techniques and computational modeling to promote rapid and transformative advances in vaccinology and vaccine discovery. The NIH/NIAID Human Immunology Project Consortium (HIPC) has leveraged systems immunology approaches to identify molecular signatures associated with the immunogenicity of many vaccines. However, comparative analyses have been limited by the distributed nature of some data, potential batch effects across studies, and the absence of multiple relevant studies from non-HIPC groups in ImmPort. To support comparative analyses across different vaccines, we have created the Immune Signatures Data Resource, a compendium of standardized systems vaccinology datasets. This data resource is available through ImmuneSpace, along with code to reproduce the processing and batch normalization starting from the underlying study data in ImmPort and the Gene Expression Omnibus (GEO). The current release comprises 1405 participants from 53 cohorts profiling the response to 24 different vaccines. This novel systems vaccinology data release represents a valuable resource for comparative and meta-analyses that will accelerate our understanding of mechanisms underlying vaccine responses.
Keywords
Humans, Systems Biology/methods, Vaccines, Vaccinology
Pubmed
Web of science
Open Access
Yes
Create date
02/11/2022 9:12
Last modification date
23/01/2024 7:37
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