Inter-Laboratory Reproducibility of Inducible HIV-1 Reservoir Quantification by TILDA.

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Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_FA8B8D55233A
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Inter-Laboratory Reproducibility of Inducible HIV-1 Reservoir Quantification by TILDA.
Journal
Viruses
Author(s)
Lungu C., Procopio F.A., Overmars R.J., Beerkens RJJ, Voermans JJC, Rao S., Prins HAB, Rokx C., Pantaleo G., Vijver DAMCV, Mahmoudi T., Boucher CAB, Gruters R.A., Kampen JJAV
ISSN
1999-4915 (Electronic)
ISSN-L
1999-4915
Publication state
Published
Issued date
02/09/2020
Peer-reviewed
Oui
Volume
12
Number
9
Pages
E973
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: epublish
Abstract
Substantial efforts to eliminate or reduce latent HIV-1 reservoirs are underway in clinical trials and have created a critical demand for sensitive, accurate, and reproducible tools to evaluate the efficacy of these strategies. Alternative reservoir quantification assays have been developed to circumvent limitations of the quantitative viral outgrowth assay. One such assay is tat/rev induced limiting dilution assay (TILDA), which measures the frequency of CD4+ T cells harboring inducible latent HIV-1 provirus. We modified pre-amplification reagents and conditions (TILDA v2.0) to improve assay execution and first internally validated assay performance using CD4+ T cells obtained from cART-suppressed HIV-1-infected individuals. Detection of tat/rev multiply spliced RNA was not altered by modifying pre-amplification conditions, confirming the robustness of the assay, and supporting the technique's amenability to limited modifications to ensure better implementation for routine use in clinical studies of latent HIV-1 reservoirs. Furthermore, we cross-validated results of TILDA v2.0 and the original assay performed in two separate laboratories using samples from 15 HIV-1-infected individuals. TILDA and TILDA v2.0 showed a strong correlation (Lin's Concordance Correlation Coefficient = 0.86). The low inter-laboratory variability between TILDAs performed at different institutes further supports use of TILDA for reservoir quantitation in multi-center interventional HIV-1 Cure trials.
Keywords
HIV-1 latency, TILDA, assay performance, inducible reservoirs, reservoir quantification
Pubmed
Web of science
Open Access
Yes
Create date
14/09/2020 9:55
Last modification date
23/01/2024 8:37
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