Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.

Details

Serval ID
serval:BIB_E21D5E5E845C
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.
Journal
Journal of proteome research
Author(s)
Deutsch E.W., Vizcaíno J.A., Jones A.R., Binz P.A., Lam H., Klein J., Bittremieux W., Perez-Riverol Y., Tabb D.L., Walzer M., Ricard-Blum S., Hermjakob H., Neumann S., Mak T.D., Kawano S., Mendoza L., Van Den Bossche T., Gabriels R., Bandeira N., Carver J., Pullman B., Sun Z., Hoffmann N., Shofstahl J., Zhu Y., Licata L., Quaglia F., Tosatto SCE, Orchard S.E.
ISSN
1535-3907 (Electronic)
ISSN-L
1535-3893
Publication state
Published
Issued date
03/02/2023
Peer-reviewed
Oui
Volume
22
Number
2
Pages
287-301
Language
english
Notes
Publication types: Journal Article ; Review ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
Publication Status: ppublish
Abstract
The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. Here we describe the general operation of the PSI, including its leadership, working groups, yearly workshops, and the document process by which proposals are thoroughly and publicly reviewed in order to be ratified as PSI standards. We briefly describe the current state of the many existing PSI standards, some of which remain the same as when originally developed, some of which have undergone subsequent revisions, and some of which have become obsolete. Then the set of proposals currently being developed are described, with an open call to the community for participation in the forging of the next generation of standards. Finally, we describe some synergies and collaborations with other organizations and look to the future in how the PSI will continue to promote the open sharing of data and thus accelerate the progress of the field of proteomics.
Keywords
Humans, Proteomics, Proteome, Reference Standards, Vocabulary, Controlled, Mass Spectrometry, Databases, Protein, Human Proteome Organization, Proteomics Standards Initiative, mass spectrometry, molecular interactions, proteomics, standards
Pubmed
Web of science
Open Access
Yes
Create date
16/01/2023 11:53
Last modification date
16/11/2023 8:09
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