KnotProt 2.0: a database of proteins with knots and other entangled structures.

Détails

Ressource 1Télécharger: gky1140.pdf (2610.06 [Ko])
Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_CACEFF8F3AA5
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Titre
KnotProt 2.0: a database of proteins with knots and other entangled structures.
Périodique
Nucleic Acids Research
Auteur(s)
Dabrowski-Tumanski P., Rubach P., Goundaroulis D., Dorier J., Sulkowski P., Millett K.C., Rawdon E.J., Stasiak A., Sulkowska J.I.
ISSN
1362-4962 (Electronic)
ISSN-L
0305-1048
Statut éditorial
Publié
Date de publication
08/01/2019
Peer-reviewed
Oui
Volume
47
Numéro
D1
Pages
D367-D375
Langue
anglais
Résumé
The KnotProt 2.0 database (the updated version of the KnotProt database) collects information about proteins which form knots and other entangled structures. New features in KnotProt 2.0 include the characterization of both probabilistic and deterministic entanglements which can be formed by disulfide bonds and interactions via ions, a refined characterization of entanglement in terms of knotoids, the identification of the so-called cysteine knots, the possibility to analyze all or a non-redundant set of proteins, and various technical updates. The KnotProt 2.0 database classifies all entangled proteins, represents their complexity in the form of a knotting fingerprint, and presents many biological and geometrical statistics based on these results. Currently the database contains >2000 entangled structures, and it regularly self-updates based on proteins deposited in the Protein Data Bank (PDB).
Pubmed
Web of science
Open Access
Oui
Création de la notice
11/04/2019 10:27
Dernière modification de la notice
20/08/2019 15:45
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