Two-stage Off-Gel isoelectric focusing: protein followed by peptide fractionation and application to proteome analysis of human plasma

Details

Serval ID
serval:BIB_BF7B88F64B5D
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Two-stage Off-Gel isoelectric focusing: protein followed by peptide fractionation and application to proteome analysis of human plasma
Journal
Electrophoresis
Author(s)
Heller  M., Michel  P. E., Morier  P., Crettaz  D., Wenz  C., Tissot  J. D., Reymond  F., Rossier  J. S.
ISSN
0173-0835 (Print)
Publication state
Published
Issued date
03/2005
Volume
26
Number
6
Pages
1174-88
Notes
Journal Article
Research Support, Non-U.S. Gov't --- Old month value: Mar
Abstract
This paper presents the recently introduced Off-Gel electrophoresis (OGE) technology as a versatile tool to reproducibly fractionate intact proteins and peptides into discrete liquid fractions. The coupling of two stages of OGE, i.e., the separation of intact proteins in a first-stage followed by fractionation of peptides derived from each protein fraction after proteolysis in a second stage, results in an array of 15 x 15 fractions that are directly amenable to additional peptide fractionation like reverse-phase liquid chromatography (RPC). The analysis of all second-stage peptide fractions from only the first-stage protein fraction representing pH 5.0 -5.15 by on-line reverse-phase LC-tandem mass spectrometry resulted in the identification of 53 proteins (337 peptides), of which 10 were on different immunoglobulin (Ig) chains, with an input of only 1.5 mg human blood plasma proteins. Increasing the protein load to approximately 12 mg increased the number of identified proteins in the same protein fraction to 73 proteins (449 peptides), of which 15 were Ig-related. Immunodepletion of six of the most abundant proteins (albumin, transferrin, haptoglobin, IgG, IgA, and alpha-1-antitrypsin) prior to first-stage OGE with an input of 1.5 mg of protein (equivalent to approximately 10 mg nondepleted plasma) resulted in the identification of 81 proteins (660 peptides), of which three were still Ig fragments. The pI-based separation of peptides appears to be nonuniform based on the theoretically determined pI values of identified peptides. This observation specifically accounts for the neutral zone (pI 5-8) and can be accounted for by the physicochemical properties of the peptides given by their amino acid composition. The power of OGE separation of proteins and peptides is discussed with a focus on the use of the knowledge about the pI of proteins and peptides that assist the validation of correct identifications together with the retention time of peptides on RPC.
Keywords
Blood Proteins/*isolation & purification Chromatography, High Pressure Liquid/methods Electrophoresis, Gel, Two-Dimensional/*methods Humans Isoelectric Focusing/*methods Peptide Fragments/*blood/*isolation & purification Protein Isoforms/isolation & purification Proteomics/*methods Reproducibility of Results Trypsin/metabolism
Pubmed
Web of science
Create date
25/01/2008 16:34
Last modification date
20/08/2019 16:33
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