trome, trEST and trGEN: databases of predicted protein sequences.

Details

Serval ID
serval:BIB_BD2F5B01B19E
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
trome, trEST and trGEN: databases of predicted protein sequences.
Journal
Nucleic Acids Research
Author(s)
Sperisen P., Iseli C., Pagni M., Stevenson B.J., Bucher P., Jongeneel C.V.
ISSN
1362-4962[electronic], 0305-1048[linking]
Publication state
Published
Issued date
2004
Volume
32
Number
Database issue
Pages
D509-D511
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Abstract
We previously introduced two new protein databases (trEST and trGEN) of hypothetical protein sequences predicted from EST and HTG sequences, respectively. Here, we present the updates made on these two databases plus a new database (trome), which uses alignments of EST data to HTG or full genomes to generate virtual transcripts and coding sequences. This new database is of higher quality and since it contains the information in a much denser format it is of much smaller size. These new databases are in a Swiss-Prot-like format and are updated on a weekly basis (trEST and trGEN) or every 3 months (trome). They can be downloaded by anonymous ftp from ftp://ftp.isrec.isb-sib.ch/pub/databases.
Keywords
Animals, Computational Biology, Databases, Genetic, Exons, Expressed Sequence Tags, Genomics, Humans, Information Storage and Retrieval, Internet, Proteins/chemistry, Proteins/genetics, Transcription, Genetic
Pubmed
Web of science
Open Access
Yes
Create date
24/01/2008 15:39
Last modification date
20/08/2019 15:31
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