trome, trEST and trGEN: databases of predicted protein sequences.

Détails

ID Serval
serval:BIB_BD2F5B01B19E
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Titre
trome, trEST and trGEN: databases of predicted protein sequences.
Périodique
Nucleic Acids Research
Auteur(s)
Sperisen P., Iseli C., Pagni M., Stevenson B.J., Bucher P., Jongeneel C.V.
ISSN
1362-4962[electronic], 0305-1048[linking]
Statut éditorial
Publié
Date de publication
2004
Volume
32
Numéro
Database issue
Pages
D509-D511
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Résumé
We previously introduced two new protein databases (trEST and trGEN) of hypothetical protein sequences predicted from EST and HTG sequences, respectively. Here, we present the updates made on these two databases plus a new database (trome), which uses alignments of EST data to HTG or full genomes to generate virtual transcripts and coding sequences. This new database is of higher quality and since it contains the information in a much denser format it is of much smaller size. These new databases are in a Swiss-Prot-like format and are updated on a weekly basis (trEST and trGEN) or every 3 months (trome). They can be downloaded by anonymous ftp from ftp://ftp.isrec.isb-sib.ch/pub/databases.
Mots-clé
Animals, Computational Biology, Databases, Genetic, Exons, Expressed Sequence Tags, Genomics, Humans, Information Storage and Retrieval, Internet, Proteins/chemistry, Proteins/genetics, Transcription, Genetic
Pubmed
Web of science
Open Access
Oui
Création de la notice
24/01/2008 16:39
Dernière modification de la notice
09/05/2019 0:32
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