De novo design of fibrils made of short alpha-helical coiled coil peptides

Details

Serval ID
serval:BIB_B865900D4E20
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
De novo design of fibrils made of short alpha-helical coiled coil peptides
Journal
Chemistry and Biology
Author(s)
Potekhin  S. A., Melnik  T. N., Popov  V., Lanina  N. F., Vazina  A. A., Rigler  P., Verdini  A. S., Corradin  G., Kajava  A. V.
ISSN
1074-5521 (Print)
Publication state
Published
Issued date
11/2001
Volume
8
Number
11
Pages
1025-32
Notes
Journal Article
Research Support, Non-U.S. Gov't --- Old month value: Nov
Abstract
BACKGROUND: The alpha-helical coiled coil structures formed by 25-50 residues long peptides are recognized as one of Nature's favorite ways of creating an oligomerization motif. Known de novo designed and natural coiled coils use the lateral dimension for oligomerization but not the axial one. Previous attempts to design alpha-helical peptides with a potential for axial growth led to fibrous aggregates which have an unexpectedly big and irregular thickness. These facts encouraged us to design a coiled coil peptide which self-assembles into soluble oligomers with a fixed lateral dimension and whose alpha-helices associate in a staggered manner and trigger axial growth of the coiled coil. Designing the coiled coil with a large number of subunits, we also pursue the practical goal of obtaining a valuable scaffold for the construction of multivalent fusion proteins. RESULTS: The designed 34-residue peptide self-assembles into long fibrils at slightly acid pH and into spherical aggregates at neutral pH. The fibrillogenesis is completely reversible upon pH change. The fibrils were characterized using circular dichroism spectroscopy, sedimentation diffusion, electron microscopy, differential scanning calorimetry and X-ray fiber diffraction. The peptide was deliberately engineered to adopt the structure of a five-stranded coiled coil rope with adjacent alpha-helices, staggered along the fibril axis. As shown experimentally, the most likely structure matches the predicted five-stranded arrangement. CONCLUSIONS: The fact that the peptide assembles in an expected fibril arrangement demonstrates the credibility of our conception of design. The discovery of a short peptide with fibril-forming ability and stimulus-sensitive behavior opens new opportunities for a number of applications.
Keywords
Amino Acid Motifs Amino Acid Sequence Calorimetry, Differential Scanning Circular Dichroism Drug Design Hydrogen-Ion Concentration Microscopy, Electron Molecular Sequence Data Peptides/*chemical synthesis/chemistry Protein Structure, Secondary X-Ray Diffraction
Pubmed
Web of science
Open Access
Yes
Create date
24/01/2008 14:55
Last modification date
20/08/2019 15:26
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