Conformational analysis of a stereochemically complete set of cis-enediol peptide analogues.

Details

Serval ID
serval:BIB_B5744E2FF8E8
Type
Article: article from journal or magazin.
Collection
Publications
Title
Conformational analysis of a stereochemically complete set of cis-enediol peptide analogues.
Journal
Journal of the American Chemical Society
Author(s)
Michielin O., Zoete V., Gierasch T.M., Eckstein J., Napper A., Verdine G., Karplus M.
ISSN
0002-7863
Publication state
Published
Issued date
2002
Peer-reviewed
Oui
Volume
124
Number
37
Pages
11131-11141
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, U.S. Gov't, P.H.S.
Publication Status: ppublish
Abstract
A conformational analysis of a stereochemically complete set of peptide analogues based on a cis-enediol unit is presented. The cis-enediol unit, which can replace a two or a three amino acid segment of a peptide, contains two "side chains", four asymmetrical carbon atoms, and six free dihedral angles. To determine the accessible conformational space, the molecules are divided into three fragments, each containing two free dihedral angles. The energy surfaces are computed for all dihedral angle values, and the possible conformations of the cis-enediol unit analogues are built using all combinations of the surface minima. Such a "build-up" procedure, which is very fast, is able to reproduce 75% of the minima obtained from a full dihedral angle exploration of the conformational space. The cis-enediol unit minima are compared with the corresponding di- and tripeptide minima; all peptide minima can be closely matched by a cis-enediol unit minimum of low energy (less than 2.2 kcal/mol above the lowest energy conformer). However, there are low energy minima of the cis-enediol unit that have no corresponding minima in peptides. The results are shown to depend strongly on the chirality of the analogues. The ability of each of the stereoisomers to mimic natural peptides, evaluated by the present approach, is correlated with its experimental activity in a renin inhibition assay.
Keywords
Alcohols/chemistry, Alcohols/metabolism, Alkenes/chemistry, Alkenes/metabolism, Amino Acid Sequence, Computer Simulation, Humans, Models, Molecular, Molecular Conformation, Molecular Mimicry, Peptides/chemistry, Peptides/pharmacology, Renin/antagonists &amp, inhibitors, Renin/metabolism, Stereoisomerism, Surface Properties, Thermodynamics
Pubmed
Web of science
Create date
28/01/2008 12:22
Last modification date
20/08/2019 16:23
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