Accurate and rapid antibiotic susceptibility testing using a machine learning-assisted nanomotion technology platform.

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Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_ABB57C7C3258
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Accurate and rapid antibiotic susceptibility testing using a machine learning-assisted nanomotion technology platform.
Journal
Nature communications
Author(s)
Sturm A., Jóźwiak G., Verge M.P., Munch L., Cathomen G., Vocat A., Luraschi-Eggemann A., Orlando C., Fromm K., Delarze E., Świątkowski M., Wielgoszewski G., Totu R.M., García-Castillo M., Delfino A., Tagini F., Kasas S., Lass-Flörl C., Gstir R., Cantón R., Greub G., Cichocka D.
ISSN
2041-1723 (Electronic)
ISSN-L
2041-1723
Publication state
Published
Issued date
18/03/2024
Peer-reviewed
Oui
Volume
15
Number
1
Pages
2037
Language
english
Notes
Publication types: Journal Article
Publication Status: epublish
Abstract
Antimicrobial resistance (AMR) is a major public health threat, reducing treatment options for infected patients. AMR is promoted by a lack of access to rapid antibiotic susceptibility tests (ASTs). Accelerated ASTs can identify effective antibiotics for treatment in a timely and informed manner. We describe a rapid growth-independent phenotypic AST that uses a nanomotion technology platform to measure bacterial vibrations. Machine learning techniques are applied to analyze a large dataset encompassing 2762 individual nanomotion recordings from 1180 spiked positive blood culture samples covering 364 Escherichia coli and Klebsiella pneumoniae isolates exposed to cephalosporins and fluoroquinolones. The training performances of the different classification models achieve between 90.5 and 100% accuracy. Independent testing of the AST on 223 strains, including in clinical setting, correctly predict susceptibility and resistance with accuracies between 89.5% and 98.9%. The study shows the potential of this nanomotion platform for future bacterial phenotype delineation.
Keywords
Humans, Microbial Sensitivity Tests, Anti-Bacterial Agents/pharmacology, Cephalosporins, Bacteria, Machine Learning, Technology
Pubmed
Web of science
Open Access
Yes
Create date
20/03/2024 11:59
Last modification date
06/04/2024 6:24
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