Fourmidable: a database for ant genomics.

Détails

Ressource 1Télécharger: BIB_A6D772333D09.P001.pdf (547.52 [Ko])
Etat: Public
Version: de l'auteur
ID Serval
serval:BIB_A6D772333D09
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Titre
Fourmidable: a database for ant genomics.
Périodique
BMC Genomics
Auteur(s)
Wurm Y., Uva P., Ricci F., Wang J., Jemielity S., Iseli C., Falquet L., Keller L.
ISSN
1471-2164[electronic], 1471-2164[linking]
Statut éditorial
Publié
Date de publication
2009
Peer-reviewed
Oui
Volume
10
Numéro
5
Pages
5
Langue
anglais
Résumé
BACKGROUND: Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. DESCRIPTION: The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. CONCLUSION: Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch.
Mots-clé
Animals, Ants/genetics, Computational Biology/methods, Databases, Genetic, Expressed Sequence Tags, Genomics/methods, Oligonucleotide Array Sequence Analysis
Pubmed
Web of science
Open Access
Oui
Création de la notice
18/12/2008 14:30
Dernière modification de la notice
20/08/2019 15:11
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