Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa.

Détails

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Etat: Public
Version: Final published version
Licence: Non spécifiée
ID Serval
serval:BIB_9BFA9953E75C
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Titre
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa.
Périodique
Systematic biology
Auteur(s)
Antonelli A., Hettling H., Condamine F.L., Vos K., Nilsson R.H., Sanderson M.J., Sauquet H., Scharn R., Silvestro D., Töpel M., Bacon C.D., Oxelman B., Vos R.A.
ISSN
1076-836X (Electronic)
ISSN-L
1063-5157
Statut éditorial
Publié
Date de publication
01/03/2017
Peer-reviewed
Oui
Volume
66
Numéro
2
Pages
152-166
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: ppublish
Résumé
Rapidly growing biological data-including molecular sequences and fossils-hold an unprecedented potential to reveal how evolutionary processes generate and maintain biodiversity. However, researchers often have to develop their own idiosyncratic workflows to integrate and analyze these data for reconstructing time-calibrated phylogenies. In addition, divergence times estimated under different methods and assumptions, and based on data of various quality and reliability, should not be combined without proper correction. Here we introduce a modular framework termed SUPERSMART (Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa), and provide a proof of concept for dealing with the moving targets of evolutionary and biogeographical research. This framework assembles comprehensive data sets of molecular and fossil data for any taxa and infers dated phylogenies using robust species tree methods, also allowing for the inclusion of genomic data produced through next-generation sequencing techniques. We exemplify the application of our method by presenting phylogenetic and dating analyses for the mammal order Primates and for the plant family Arecaceae (palms). We believe that this framework will provide a valuable tool for a wide range of hypothesis-driven research questions in systematics, biogeography, and evolution. SUPERSMART will also accelerate the inference of a "Dated Tree of Life" where all node ages are directly comparable. [Bayesian phylogenetics; data mining; divide-and-conquer methods; GenBank; multilocus multispecies coalescent; next-generation sequencing; palms; primates; tree calibration.].

Mots-clé
Age Factors, Animal Migration, Animals, Arecaceae/classification, Bayes Theorem, Classification/methods, Fossils, Phylogeny, Primates/classification, Reproducibility of Results, Time
Pubmed
Web of science
Open Access
Oui
Création de la notice
23/09/2016 18:30
Dernière modification de la notice
20/08/2019 15:02
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