Cooperative development of logical modelling standards and tools with CoLoMoTo.

Détails

ID Serval
serval:BIB_918E26626992
Type
Article: article d'un périodique ou d'un magazine.
Sous-type
Synthèse (review): revue aussi complète que possible des connaissances sur un sujet, rédigée à partir de l'analyse exhaustive des travaux publiés.
Collection
Publications
Titre
Cooperative development of logical modelling standards and tools with CoLoMoTo.
Périodique
Bioinformatics
Auteur(s)
Naldi A., Monteiro P.T., Müssel C., Tools , Kestler H.A., Kestler H.A., Thieffry D., Xenarios I., Saez-Rodriguez J., Helikar T., Chaouiya C.
Collaborateur(s)
Consortium for Logical Models
Contributeur(s)
Tools , Albert R., Barberis M., Calzone L., Chaouiya C., Chasapi A., Cokelaer T., Crespo I., Dorier J., Dräger A., Helikar T., Hernandez C., Hucka M., de Jong H., Keating SM., Kestler HA., Klamt S., Klarner H., Laubenbacher R., Novère NL., Monteiro PT., Müssel C., Naldi A., Niknejad A., Rodriguez N., Saez-Rodriguez J., Siebert H., Stoll G., Thieffry D., Xenarios I., Zañudo JG.
ISSN
1367-4811 (Electronic)
ISSN-L
1367-4803
Statut éditorial
Publié
Date de publication
2015
Peer-reviewed
Oui
Volume
31
Numéro
7
Pages
1154-1159
Langue
anglais
Résumé
The identification of large regulatory and signalling networks involved in the control of crucial cellular processes calls for proper modelling approaches. Indeed, models can help elucidate properties of these networks, understand their behaviour and provide (testable) predictions by performing in silico experiments. In this context, qualitative, logical frameworks have emerged as relevant approaches, as demonstrated by a growing number of published models, along with new methodologies and software tools. This productive activity now requires a concerted effort to ensure model reusability and interoperability between tools. Following an outline of the logical modelling framework, we present the most important achievements of the Consortium for Logical Models and Tools, along with future objectives. Our aim is to advertise this open community, which welcomes contributions from all researchers interested in logical modelling or in related mathematical and computational developments.
Mots-clé
Animals, Cells/metabolism, Computer Simulation, Humans, Metabolic Networks and Pathways, Models, Theoretical, Societies, Scientific, Software/standards, Systems Biology/methods
Pubmed
Open Access
Oui
Création de la notice
07/08/2015 12:26
Dernière modification de la notice
08/05/2019 22:02
Données d'usage