AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.

Détails

Ressource 1Télécharger: BIB_89D969C4038A.P001.pdf (134.84 [Ko])
Etat: Public
Version: de l'auteur
ID Serval
serval:BIB_89D969C4038A
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Titre
AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.
Périodique
Bioinformatics
Auteur(s)
Martin O., Valsesia A., Telenti A., Xenarios I., Stevenson B.J.
ISSN
1367-4811 (Electronic)
ISSN-L
1367-4803
Statut éditorial
Publié
Date de publication
2009
Volume
25
Numéro
5
Pages
662-663
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't Publication Status: ppublish
Résumé
SUMMARY: We present a tool designed for visualization of large-scale genetic and genomic data exemplified by results from genome-wide association studies. This software provides an integrated framework to facilitate the interpretation of SNP association studies in genomic context. Gene annotations can be retrieved from Ensembl, linkage disequilibrium data downloaded from HapMap and custom data imported in BED or WIG format. AssociationViewer integrates functionalities that enable the aggregation or intersection of data tracks. It implements an efficient cache system and allows the display of several, very large-scale genomic datasets. AVAILABILITY: The Java code for AssociationViewer is distributed under the GNU General Public Licence and has been tested on Microsoft Windows XP, MacOSX and GNU/Linux operating systems. It is available from the SourceForge repository. This also includes Java webstart, documentation and example datafiles.
Mots-clé
Computational Biology/methods, Databases, Genetic, Genomics, Internet, Linkage Disequilibrium, Software, User-Computer Interface
Pubmed
Web of science
Open Access
Oui
Création de la notice
04/09/2011 14:02
Dernière modification de la notice
20/08/2019 14:48
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