PCR performance in the SARS-CoV-2 Omicron variant of concern?

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State: Public
Version: Final published version
License: CC BY-NC-SA 4.0
Serval ID
serval:BIB_679AEA543712
Type
Article: article from journal or magazin.
Publication sub-type
Review (review): journal as complete as possible of one specific subject, written based on exhaustive analyses from published work.
Collection
Publications
Institution
Title
PCR performance in the SARS-CoV-2 Omicron variant of concern?
Journal
Swiss medical weekly
Author(s)
Metzger CMJA, Lienhard R., Seth-Smith HMB, Roloff T., Wegner F., Sieber J., Bel M., Greub G., Egli A.
ISSN
1424-3997 (Electronic)
ISSN-L
0036-7672
Publication state
Published
Issued date
06/12/2021
Peer-reviewed
Oui
Volume
151
Pages
w30120
Language
english
Notes
Publication types: Journal Article
Publication Status: epublish
Abstract
The new SARS-CoV-2 Omicron variant (B.1.1.529) has been recently declared a Variant of Concern due to a series of important mutations in the viral spike protein and especially in the receptor-binding domain. While investigations into the spread of this new variant are ongoing, the first cases have been detected in Switzerland. Important questions have been raised: (1) Will the PCR assays commonly used to detect SARS-CoV-2 still work for the Omicron variant? (2) Can specific PCR features, e.g. S-gene dropout, be used to identify potential Omicron samples? In this minireview we provide current knowledge on the Omicron variant and guidance on its PCR validation.
Pubmed
Open Access
Yes
Create date
20/12/2021 13:36
Last modification date
20/07/2023 7:11
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