vHOG, a multispecies vertebrate ontology of homologous organs groups.

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Etat: Public
Version: de l'auteur
ID Serval
serval:BIB_5605BDB61FC5
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Titre
vHOG, a multispecies vertebrate ontology of homologous organs groups.
Périodique
Bioinformatics
Auteur(s)
Niknejad A., Comte A., Parmentier G., Roux J., Bastian F.B., Robinson-Rechavi M.
ISSN
1367-4811 (Electronic)
ISSN-L
1367-4803
Statut éditorial
Publié
Date de publication
2012
Peer-reviewed
Oui
Volume
28
Numéro
7
Pages
1017-1020
Langue
anglais
Résumé
MOTIVATION: Most anatomical ontologies are species-specific, whereas a framework for comparative studies is needed. We describe the vertebrate Homologous Organs Groups ontology, vHOG, used to compare expression patterns between species.¦RESULTS: vHOG is a multispecies anatomical ontology for the vertebrate lineage. It is based on the HOGs used in the Bgee database of gene expression evolution. vHOG version 1.4 includes 1184 terms, follows OBO principles and is based on the Common Anatomy Reference Ontology (CARO). vHOG only describes structures with historical homology relations between model vertebrate species. The mapping to species-specific anatomical ontologies is provided as a separate file, so that no homology hypothesis is stated within the ontology itself. Each mapping has been manually reviewed, and we provide support codes and references when available. Availability and implementation: vHOG is available from the Bgee download site (http://bgee.unil.ch/), as well as from the OBO Foundry and the NCBO Bioportal websites.¦CONTACT: bgee@isb-sib.ch; frederic.bastian@unil.ch.
Pubmed
Web of science
Open Access
Oui
Création de la notice
23/01/2012 13:13
Dernière modification de la notice
20/08/2019 14:10
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