JULIDE: a software tool for 3D reconstruction and statistical analysis of autoradiographic mouse brain sections.

Détails

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Etat: Serval
Version: de l'auteur
ID Serval
serval:BIB_46E0FF1EDB65
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Titre
JULIDE: a software tool for 3D reconstruction and statistical analysis of autoradiographic mouse brain sections.
Périodique
Plos One
Auteur(s)
Ribes D., Parafita J., Charrier R., Magara F., Magistretti P.J., Thiran J.P.
ISSN
1932-6203[electronic], 1932-6203[linking]
Statut éditorial
Publié
Date de publication
2010
Peer-reviewed
Oui
Volume
5
Numéro
11
Pages
e14094
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: epublish
Résumé
In this article we introduce JULIDE, a software toolkit developed to perform the 3D reconstruction, intensity normalization, volume standardization by 3D image registration and voxel-wise statistical analysis of autoradiographs of mouse brain sections. This software tool has been developed in the open-source ITK software framework and is freely available under a GPL license. The article presents the complete image processing chain from raw data acquisition to 3D statistical group analysis. Results of the group comparison in the context of a study on spatial learning are shown as an illustration of the data that can be obtained with this tool.
Pubmed
Open Access
Oui
Création de la notice
23/12/2010 16:29
Dernière modification de la notice
08/05/2019 17:58
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