First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies.

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State: Public
Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_2B5CEC1B26D7
Type
Article: article from journal or magazin.
Publication sub-type
Review (review): journal as complete as possible of one specific subject, written based on exhaustive analyses from published work.
Collection
Publications
Institution
Title
First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies.
Journal
Molecular ecology resources
Author(s)
Gauthier J., Meier J., Legeai F., McClure M., Whibley A., Bretaudeau A., Boulain H., Parrinello H., Mugford S.T., Durbin R., Zhou C., McCarthy S., Wheat C.W., Piron-Prunier F., Monsempes C., François M.C., Jay P., Noûs C., Persyn E., Jacquin-Joly E., Meslin C., Montagné N., Lemaitre C., Elias M.
ISSN
1755-0998 (Electronic)
ISSN-L
1755-098X
Publication state
Published
Issued date
05/2023
Peer-reviewed
Oui
Volume
23
Number
4
Pages
872-885
Language
english
Notes
Publication types: Journal Article
Publication Status: ppublish
Abstract
The ithomiine butterflies (Nymphalidae: Danainae) represent the largest known radiation of Müllerian mimetic butterflies. They dominate by number the mimetic butterfly communities, which include species such as the iconic neotropical Heliconius genus. Recent studies on the ecology and genetics of speciation in Ithomiini have suggested that sexual pheromones, colour pattern and perhaps hostplant could drive reproductive isolation. However, no reference genome was available for Ithomiini, which has hindered further exploration on the genetic architecture of these candidate traits, and more generally on the genomic patterns of divergence. Here, we generated high-quality, chromosome-scale genome assemblies for two Melinaea species, M. marsaeus and M. menophilus, and a draft genome of the species Ithomia salapia. We obtained genomes with a size ranging from 396 to 503 Mb across the three species and scaffold N50 of 40.5 and 23.2 Mb for the two chromosome-scale assemblies. Using collinearity analyses we identified massive rearrangements between the two closely related Melinaea species. An annotation of transposable elements and gene content was performed, as well as a specialist annotation to target chemosensory genes, which is crucial for host plant detection and mate recognition in mimetic species. A comparative genomic approach revealed independent gene expansions in ithomiines and particularly in gustatory receptor genes. These first three genomes of ithomiine mimetic butterflies constitute a valuable addition and a welcome comparison to existing biological models such as Heliconius, and will enable further understanding of the mechanisms of adaptation in butterflies.
Keywords
Animals, Butterflies/genetics, Adaptation, Physiological, Phenotype, Genomics, Chromosomes/genetics, Hi-C, chromosome-level genome, ithomiine butterflies, mimicry, olfaction
Pubmed
Web of science
Open Access
Yes
Create date
14/11/2022 16:53
Last modification date
12/04/2023 6:54
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