Data Streaming for Metabolomics: Accelerating Data Processing and Analysis from Days to Minutes.

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State: Public
Version: author
Serval ID
serval:BIB_2AC5597A31BE
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Data Streaming for Metabolomics: Accelerating Data Processing and Analysis from Days to Minutes.
Journal
Analytical chemistry
Author(s)
Montenegro-Burke J.R., Aisporna A.E., Benton H.P., Rinehart D., Fang M., Huan T., Warth B., Forsberg E., Abe B.T., Ivanisevic J., Wolan D.W., Teyton L., Lairson L., Siuzdak G.
ISSN
1520-6882 (Electronic)
ISSN-L
0003-2700
Publication state
Published
Issued date
17/01/2017
Peer-reviewed
Oui
Volume
89
Number
2
Pages
1254-1259
Language
english
Notes
Publication types: Journal Article ; Research Support, U.S. Gov't, Non-P.H.S.
Publication Status: ppublish
Abstract
The speed and throughput of analytical platforms has been a driving force in recent years in the "omics" technologies and while great strides have been accomplished in both chromatography and mass spectrometry, data analysis times have not benefited at the same pace. Even though personal computers have become more powerful, data transfer times still represent a bottleneck in data processing because of the increasingly complex data files and studies with a greater number of samples. To meet the demand of analyzing hundreds to thousands of samples within a given experiment, we have developed a data streaming platform, XCMS Stream, which capitalizes on the acquisition time to compress and stream recently acquired data files to data processing servers, mimicking just-in-time production strategies from the manufacturing industry. The utility of this XCMS Online-based technology is demonstrated here in the analysis of T cell metabolism and other large-scale metabolomic studies. A large scale example on a 1000 sample data set demonstrated a 10 000-fold time savings, reducing data analysis time from days to minutes. Further, XCMS Stream has the capability to increase the efficiency of downstream biochemical dependent data acquisition (BDDA) analysis by initiating data conversion and data processing on subsets of data acquired, expanding its application beyond data transfer to smart preliminary data decision-making prior to full acquisition.
Keywords
Data Compression/economics, Data Compression/methods, Data Mining/economics, Data Mining/methods, Humans, Metabolomics/economics, Metabolomics/methods, Software, T-Lymphocytes/metabolism, Time Factors, Workflow
Pubmed
Web of science
Open Access
Yes
Create date
20/02/2017 17:28
Last modification date
21/08/2019 6:08
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