Opposite effect of counterions on the persistence length of nicked and non-nicked DNA.

Details

Serval ID
serval:BIB_240D3761C9EC
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Opposite effect of counterions on the persistence length of nicked and non-nicked DNA.
Journal
Journal of Molecular Biology
Author(s)
Furrer P., Bednar J., Stasiak A.Z., Katritch V., Michoud D., Stasiak A., Dubochet J.
ISSN
0022-2836[print], 0022-2836[linking]
Publication state
Published
Issued date
03/1997
Volume
266
Number
4
Pages
711-721
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Abstract
Using cryo-electron microscopy we reconstructed the three-dimensional trajectories adopted in cryovitrified solutions by double-stranded DNA molecules in which the backbone of one strand lacked a phosphate at regular intervals of 20 nucleotides. The shape of such nicked DNA molecules was compared with that of DNA molecules with exactly the same sequence but without any single-stranded scissions. Upon changing the salt concentration we observed opposite effects of charge neutralization on nicked and non-nicked DNA. In low salt solutions (10 mM Tris-HCl, 10 mM NaCl) the applied dense nicking caused ca 3.5-fold reduction of the DNA persistence length as compared with non-nicked DNA. Upon increasing the salt concentration (to 150 mM NaCl and 10 mM MgCl2) the persistence length of non-nicked DNA appreciably decreased while that of nicked DNA molecules increased by a factor of 2.
Keywords
DNA/chemistry, DNA/metabolism, DNA Damage, Freezing, Image Processing, Computer-Assisted, Magnesium Chloride/pharmacology, Microscopy, Electron, Models, Molecular, Nucleic Acid Conformation, Single-Strand Specific DNA and RNA Endonucleases/metabolism, Sodium Chloride/pharmacology
Pubmed
Web of science
Create date
24/01/2008 11:25
Last modification date
20/08/2019 14:01
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