The risk of pig and chicken farming for carriage and transmission of Escherichia coli containing extended-spectrum beta-lactamase (ESBL) and mobile colistin resistance (mcr) genes in Thailand.

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Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_1844D28023B8
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
The risk of pig and chicken farming for carriage and transmission of Escherichia coli containing extended-spectrum beta-lactamase (ESBL) and mobile colistin resistance (mcr) genes in Thailand.
Journal
Microbial genomics
Author(s)
Sudatip D., Mostacci N., Tiengrim S., Thamlikitkul V., Chasiri K., Kritiyakan A., Phanprasit W., Thinphovong C., Abdallah R., Baron S.A., Rolain J.M., Morand S., Oppliger A., Hilty M.
ISSN
2057-5858 (Electronic)
ISSN-L
2057-5858
Publication state
Published
Issued date
03/2023
Peer-reviewed
Oui
Volume
9
Number
3
Language
english
Notes
Publication types: Journal Article
Publication Status: ppublish
Abstract
South-East Asian countries report a high prevalence of extended-spectrum cephalosporin- (ESC-) and colistin-resistant Escherichia coli (Col-R-Ec). However, there are still few studies describing the molecular mechanisms and transmission dynamics of ESC-R-Ec and, especially, Col-R-Ec. This study aimed to evaluate the prevalence and transmission dynamics of Ec containing extended spectrum beta-lactamases (ESBL) and mobile colistin resistance (mcr) genes using a 'One Health' design in Thailand. The ESC-R-Ec and Col-R-Ec isolates of human stool samples (69 pig farmers, 155 chicken farmers, and 61 non-farmers), rectal swabs from animals (269 pigs and 318 chickens), and the intestinal contents of 196 rodents were investigated. Resistance mechanisms and transmission dynamics of Ec isolates (n=638) were studied using short and long read sequencing. We found higher rates of ESBL-Ec isolates among pig farmers (n=36; 52.2%) than among chicken farmers (n=58; 37.4 %; P<0.05) and the control group (n=61; 31.1 %; P<0.05). Ec with co-occurring ESBL and mcr genes were found in 17 (6.0 %), 50 (18.6 %) and 15 (4.7 %) samples from humans, pigs and chickens, respectively. We also identified 39 (13.7 %) human samples with non-identical Ec containing ESBL and mcr. We found higher rates of ESBL-Ec, in particular CTX-M-55, isolates among pig farmers than among non-pig farmers (P<0.01). 'Clonal' animal-human transmission of ESBL-Ec and Ec with mcr genes was identified but rare as we overall found a heterogenous population structure of Ec. The Col-R-Ec from human and animal samples often carried mcr-1.1 on conjugative IncX4 plasmids. The latter has been identified in Ec of many different clonal backgrounds.
Keywords
Extended-spectrum beta-lactamase, One Health, clonal transmission, mobile colistin resistance, occupational exposure, pig farm
Pubmed
Web of science
Open Access
Yes
Create date
24/03/2023 14:37
Last modification date
27/05/2023 6:50
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