A test of the null model for 5' UTR evolution based on GC content.
Details
Serval ID
serval:BIB_15A9F8727845
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
A test of the null model for 5' UTR evolution based on GC content.
Journal
Molecular biology and evolution
ISSN
1537-1719 (Electronic)
ISSN-L
0737-4038
Publication state
Published
Issued date
05/2008
Peer-reviewed
Oui
Volume
25
Number
5
Pages
801-804
Language
english
Notes
Publication types: Letter ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Publication Status: ppublish
Abstract
Eukaryotic mRNAs are headed by a stretch of noncoding sequence, the 5' untranslated region (UTR). It has been proposed that the length of 5' UTRs is selectively neutral and evolves under a process of stochastic destruction and recruitment of core promoter elements, combined with selection against the premature initiation of translation. We test this null model by investigating whether 5' UTR length varies with genomic GC content, an implicit prediction of the model. Using simulations, we show that the null model predicts a positive relationship between GC content and UTR length for genes regulated by a TATA box. Although this prediction is borne out qualitatively in genomic data from yeast, fruit flies, and humans, we find marked quantitative discrepancies. We conclude that UTR length may be shaped to some degree by the forces considered in the null model but that the model fails to provide a complete explanation for UTR length evolution.
Keywords
5' Untranslated Regions, Animals, Base Composition, Computer Simulation, Cytosine, Drosophila melanogaster, Evolution, Molecular, Guanine, Humans, Models, Genetic, RNA, Fungal, Saccharomyces cerevisiae, TATA Box
Pubmed
Web of science
Create date
23/02/2009 14:30
Last modification date
26/07/2023 11:01