Tightening of DNA knots by supercoiling facilitates their unknotting by type II DNA topoisomerases.

Details

Serval ID
serval:BIB_0770B1E1A91E
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Tightening of DNA knots by supercoiling facilitates their unknotting by type II DNA topoisomerases.
Journal
Proceedings of the National Academy of Sciences of the United States of America
Author(s)
Witz G., Dietler G., Stasiak A.
ISSN
1091-6490 (Electronic)
ISSN-L
0027-8424
Publication state
Published
Issued date
2011
Peer-reviewed
Oui
Volume
108
Number
9
Pages
3608-3611
Language
english
Abstract
Using numerical simulations, we compare properties of knotted DNA molecules that are either torsionally relaxed or supercoiled. We observe that DNA supercoiling tightens knotted portions of DNA molecules and accentuates the difference in curvature between knotted and unknotted regions. The increased curvature of knotted regions is expected to make them preferential substrates of type IIA topoisomerases because various earlier experiments have concluded that type IIA DNA topoisomerases preferentially interact with highly curved DNA regions. The supercoiling-induced tightening of DNA knots observed here shows that torsional tension in DNA may serve to expose DNA knots to the unknotting action of type IIA topoisomerases, and thus explains how these topoisomerases could maintain a low knotting equilibrium in vivo, even for long DNA molecules.
Keywords
Brownian dynamics, DNA topology, DNA structure, DNA configurations
Pubmed
Web of science
Open Access
Yes
Create date
22/03/2011 16:29
Last modification date
20/08/2019 13:29
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