Estimation of Jacquard's genetic identity coefficients with bi-allelic variants by constrained least-squares.
Détails
ID Serval
serval:BIB_FCDA0B295F18
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Estimation of Jacquard's genetic identity coefficients with bi-allelic variants by constrained least-squares.
Périodique
Heredity
ISSN
1365-2540 (Electronic)
ISSN-L
0018-067X
Statut éditorial
In Press
Peer-reviewed
Oui
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: aheadofprint
Publication Status: aheadofprint
Résumé
The Jacquard genetic identity coefficients are of fundamental importance in relatedness research. We address the estimation of these coefficients as well as other relationship parameters that derive from them such as kinship and inbreeding coefficients using a concise matrix framework. Estimation of the Jacquard coefficients via likelihood methods and the expectation-maximization algorithm is computationally very demanding for large numbers of polymorphisms. We propose a constrained least squares approach to estimate the Jacquard coefficients. A simulation study shows constrained least squares achieves root-mean-squared errors that are comparable with those of the maximum likelihood approach, in particular when founder allele frequencies are unknown, while obtaining enormous computational savings.
Pubmed
Web of science
Open Access
Oui
Création de la notice
19/11/2024 16:53
Dernière modification de la notice
21/11/2024 7:30