Estimation of Jacquard's genetic identity coefficients with bi-allelic variants by constrained least-squares.
Details
Request a copy Under indefinite embargo.
UNIL restricted access
State: Public
Version: author
License: CC BY 4.0
UNIL restricted access
State: Public
Version: author
License: CC BY 4.0
Serval ID
serval:BIB_FCDA0B295F18
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Estimation of Jacquard's genetic identity coefficients with bi-allelic variants by constrained least-squares.
Journal
Heredity
ISSN
1365-2540 (Electronic)
ISSN-L
0018-067X
Publication state
Published
Issued date
07/11/2024
Peer-reviewed
Oui
Language
english
Notes
Publication types: Journal Article
Publication Status: aheadofprint
Publication Status: aheadofprint
Abstract
The Jacquard genetic identity coefficients are of fundamental importance in relatedness research. We address the estimation of these coefficients as well as other relationship parameters that derive from them such as kinship and inbreeding coefficients using a concise matrix framework. Estimation of the Jacquard coefficients via likelihood methods and the expectation-maximization algorithm is computationally very demanding for large numbers of polymorphisms. We propose a constrained least squares approach to estimate the Jacquard coefficients. A simulation study shows constrained least squares achieves root-mean-squared errors that are comparable with those of the maximum likelihood approach, in particular when founder allele frequencies are unknown, while obtaining enormous computational savings.
Pubmed
Web of science
Open Access
Yes
Create date
19/11/2024 16:53
Last modification date
22/11/2024 17:55