Estimation of Jacquard's genetic identity coefficients with bi-allelic variants by constrained least-squares.
Détails
Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_A945D8A3E304
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Estimation of Jacquard's genetic identity coefficients with bi-allelic variants by constrained least-squares.
Périodique
Heredity
ISSN
1365-2540 (Electronic)
ISSN-L
0018-067X
Statut éditorial
Publié
Date de publication
01/2025
Peer-reviewed
Oui
Volume
134
Numéro
1
Pages
10-20
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: ppublish
Publication Status: ppublish
Résumé
The Jacquard genetic identity coefficients are of fundamental importance in relatedness research. We address the estimation of these coefficients as well as other relationship parameters that derive from them such as kinship and inbreeding coefficients using a concise matrix framework. Estimation of the Jacquard coefficients via likelihood methods and the expectation-maximization algorithm is computationally very demanding for large numbers of polymorphisms. We propose a constrained least squares approach to estimate the Jacquard coefficients. A simulation study shows constrained least squares achieves root-mean-squared errors that are comparable with those of the maximum likelihood approach, in particular when founder allele frequencies are unknown, while obtaining enormous computational savings.
Mots-clé
Least-Squares Analysis, Alleles, Models, Genetic, Algorithms, Gene Frequency, Computer Simulation, Inbreeding, Likelihood Functions
Pubmed
Web of science
Open Access
Oui
Financement(s)
Fonds national suisse / 31003A_179358
Fonds national suisse / 310030_215709
Création de la notice
07/11/2024 18:35
Dernière modification de la notice
18/01/2025 8:07