Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits.

Détails

Ressource 1Télécharger: msaa240.pdf (1776.06 [Ko])
Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_7245D0A9D57D
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits.
Périodique
Molecular biology and evolution
Auteur⸱e⸱s
Sun C., Huang J., Wang Y., Zhao X., Su L., Thomas GWC, Zhao M., Zhang X., Jungreis I., Kellis M., Vicario S., Sharakhov I.V., Bondarenko S.M., Hasselmann M., Kim C.N., Paten B., Penso-Dolfin L., Wang L., Chang Y., Gao Q., Ma L., Ma L., Zhang Z., Zhang H., Zhang H., Ruzzante L., Robertson H.M., Zhu Y., Liu Y., Yang H., Ding L., Wang Q., Ma D., Xu W., Liang C., Itgen M.W., Mee L., Cao G., Zhang Z., Sadd B.M., Hahn M.W., Schaack S., Barribeau S.M., Williams P.H., Waterhouse R.M., Mueller R.L.
ISSN
1537-1719 (Electronic)
ISSN-L
0737-4038
Statut éditorial
Publié
Date de publication
23/01/2021
Peer-reviewed
Oui
Volume
38
Numéro
2
Pages
486-501
Langue
anglais
Notes
Publication types: Comparative Study ; Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
Publication Status: ppublish
Résumé
Bumblebees are a diverse group of globally important pollinators in natural ecosystems and for agricultural food production. With both eusocial and solitary life-cycle phases, and some social parasite species, they are especially interesting models to understand social evolution, behavior, and ecology. Reports of many species in decline point to pathogen transmission, habitat loss, pesticide usage, and global climate change, as interconnected causes. These threats to bumblebee diversity make our reliance on a handful of well-studied species for agricultural pollination particularly precarious. To broadly sample bumblebee genomic and phenotypic diversity, we de novo sequenced and assembled the genomes of 17 species, representing all 15 subgenera, producing the first genus-wide quantification of genetic and genomic variation potentially underlying key ecological and behavioral traits. The species phylogeny resolves subgenera relationships, whereas incomplete lineage sorting likely drives high levels of gene tree discordance. Five chromosome-level assemblies show a stable 18-chromosome karyotype, with major rearrangements creating 25 chromosomes in social parasites. Differential transposable element activity drives changes in genome sizes, with putative domestications of repetitive sequences influencing gene coding and regulatory potential. Dynamically evolving gene families and signatures of positive selection point to genus-wide variation in processes linked to foraging, diet and metabolism, immunity and detoxification, as well as adaptations for life at high altitudes. Our study reveals how bumblebee genes and genomes have evolved across the Bombus phylogeny and identifies variations potentially linked to key ecological and behavioral traits of these important pollinators.
Mots-clé
Adaptation, Biological/genetics, Animals, Bees/genetics, Biological Evolution, Codon Usage, DNA Transposable Elements, Diet, Feeding Behavior, Gene Components, Genome Size, Genome, Insect, Selection, Genetic, Bombus, gene family evolution, genome assembly, genome evolution, insect diversity
Pubmed
Web of science
Open Access
Oui
Financement(s)
Fonds national suisse / Carrières / PP00P3_170664
Création de la notice
28/09/2020 12:49
Dernière modification de la notice
21/11/2022 9:22
Données d'usage