Quality control in functional MRI studies with MRIQC and fMRIPrep.

Détails

Ressource 1Télécharger: 37555175_BIB_518CB87B911F.pdf (1870.52 [Ko])
Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_518CB87B911F
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Quality control in functional MRI studies with MRIQC and fMRIPrep.
Périodique
Frontiers in neuroimaging
Auteur⸱e⸱s
Provins C., MacNicol E., Seeley S.H., Hagmann P., Esteban O.
ISSN
2813-1193 (Electronic)
ISSN-L
2813-1193
Statut éditorial
Publié
Date de publication
2022
Peer-reviewed
Oui
Volume
1
Pages
1073734
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: epublish
Résumé
The implementation of adequate quality assessment (QA) and quality control (QC) protocols within the magnetic resonance imaging (MRI) research workflow is resource- and time-consuming and even more so is their execution. As a result, QA/QC practices highly vary across laboratories and "MRI schools", ranging from highly specialized knowledge spots to environments where QA/QC is considered overly onerous and costly despite evidence showing that below-standard data increase the false positive and false negative rates of the final results. Here, we demonstrate a protocol based on the visual assessment of images one-by-one with reports generated by MRIQC and fMRIPrep, for the QC of data in functional (blood-oxygen dependent-level; BOLD) MRI analyses. We particularize the proposed, open-ended scope of application to whole-brain voxel-wise analyses of BOLD to correspondingly enumerate and define the exclusion criteria applied at the QC checkpoints. We apply our protocol on a composite dataset (n = 181 subjects) drawn from open fMRI studies, resulting in the exclusion of 97% of the data (176 subjects). This high exclusion rate was expected because subjects were selected to showcase artifacts. We describe the artifacts and defects more commonly found in the dataset that justified exclusion. We moreover release all the materials we generated in this assessment and document all the QC decisions with the expectation of contributing to the standardization of these procedures and engaging in the discussion of QA/QC by the community.
Mots-clé
Mriqc, exclusion criteria, fMRI, fMRIPrep, neuroimaging, quality assessment, quality control, MRIQC
Pubmed
Open Access
Oui
Financement(s)
Fonds national suisse / Carrières / 185872
Création de la notice
10/08/2023 14:31
Dernière modification de la notice
23/01/2024 8:25
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