The Quest for Orthologs orthology benchmark service in 2022.

Détails

Ressource 1Télécharger: 35552456_BIB_09AB7652C265.pdf (1380.05 [Ko])
Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_09AB7652C265
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
The Quest for Orthologs orthology benchmark service in 2022.
Périodique
Nucleic acids research
Auteur⸱e⸱s
Nevers Y., Jones TEM, Jyothi D., Yates B., Ferret M., Portell-Silva L., Codo L., Cosentino S., Marcet-Houben M., Vlasova A., Poidevin L., Kress A., Hickman M., Persson E., Piližota I., Guijarro-Clarke C., Iwasaki W., Lecompte O., Sonnhammer E., Roos D.S., Gabaldón T., Thybert D., Thomas P.D., Hu Y., Emms D.M., Bruford E., Capella-Gutierrez S., Martin M.J., Dessimoz C., Altenhoff A.
Collaborateur⸱rice⸱s
OpenEBench team the Quest for Orthologs Consortium
Contributeur⸱rice⸱s
Altenhoff A., Bruford E.A., Cosentino S., Dessimoz C., Ebersberger I., Emms D.M., Gabaldón T., Glover N., Guijarro-Clarke C., Hickman M., Hu Y., Iwasaki W., Jones TEM, Jyothi D., Kress A., Lecompte O., Linard B., Marcet-Houben M., Martin M.J., Nevers Y., Persson E., Piližota I., Poidevin L., Roos D.S., Sonhammer E., Thomas P.D., Thybert D., Vandepoele K., Vlasova A., Yates B., Capella-Gutierrez S., Codó L., Ferret M., Gonzalez-Uriarte A., Garrayo-Ventas J., Portell-Silva L., Repchevsky D., Sundesha V.
ISSN
1362-4962 (Electronic)
ISSN-L
0305-1048
Statut éditorial
Publié
Date de publication
05/07/2022
Peer-reviewed
Oui
Volume
50
Numéro
W1
Pages
W623-W632
Langue
anglais
Notes
Publication types: Meta-Analysis ; Journal Article
Publication Status: ppublish
Résumé
The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform.
Mots-clé
Phylogeny, Benchmarking, Genomics/methods, Proteome
Pubmed
Web of science
Open Access
Oui
Création de la notice
23/05/2022 14:28
Dernière modification de la notice
23/01/2024 8:20
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