The Quest for Orthologs orthology benchmark service in 2022.

Details

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State: Public
Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_09AB7652C265
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
The Quest for Orthologs orthology benchmark service in 2022.
Journal
Nucleic acids research
Author(s)
Nevers Y., Jones TEM, Jyothi D., Yates B., Ferret M., Portell-Silva L., Codo L., Cosentino S., Marcet-Houben M., Vlasova A., Poidevin L., Kress A., Hickman M., Persson E., Piližota I., Guijarro-Clarke C., Iwasaki W., Lecompte O., Sonnhammer E., Roos D.S., Gabaldón T., Thybert D., Thomas P.D., Hu Y., Emms D.M., Bruford E., Capella-Gutierrez S., Martin M.J., Dessimoz C., Altenhoff A.
Working group(s)
OpenEBench team the Quest for Orthologs Consortium
Contributor(s)
Altenhoff A., Bruford E.A., Cosentino S., Dessimoz C., Ebersberger I., Emms D.M., Gabaldón T., Glover N., Guijarro-Clarke C., Hickman M., Hu Y., Iwasaki W., Jones TEM, Jyothi D., Kress A., Lecompte O., Linard B., Marcet-Houben M., Martin M.J., Nevers Y., Persson E., Piližota I., Poidevin L., Roos D.S., Sonhammer E., Thomas P.D., Thybert D., Vandepoele K., Vlasova A., Yates B., Capella-Gutierrez S., Codó L., Ferret M., Gonzalez-Uriarte A., Garrayo-Ventas J., Portell-Silva L., Repchevsky D., Sundesha V.
ISSN
1362-4962 (Electronic)
ISSN-L
0305-1048
Publication state
Published
Issued date
05/07/2022
Peer-reviewed
Oui
Volume
50
Number
W1
Pages
W623-W632
Language
english
Notes
Publication types: Meta-Analysis ; Journal Article
Publication Status: ppublish
Abstract
The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform.
Keywords
Phylogeny, Benchmarking, Genomics/methods, Proteome
Pubmed
Web of science
Open Access
Yes
Create date
23/05/2022 14:28
Last modification date
23/01/2024 8:20
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