Human Genomics of COVID-19 Pneumonia: Contributions of Rare and Common Variants.

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State: Public
Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_FAD92BD97EE4
Type
Article: article from journal or magazin.
Publication sub-type
Review (review): journal as complete as possible of one specific subject, written based on exhaustive analyses from published work.
Collection
Publications
Institution
Title
Human Genomics of COVID-19 Pneumonia: Contributions of Rare and Common Variants.
Journal
Annual review of biomedical data science
Author(s)
Cobat A., Zhang Q., Abel L., Casanova J.L., Fellay J.
Working group(s)
COVID Human Genetic Effort
ISSN
2574-3414 (Electronic)
ISSN-L
2574-3414
Publication state
Published
Issued date
10/08/2023
Peer-reviewed
Oui
Volume
6
Pages
465-486
Language
english
Notes
Publication types: Journal Article ; Review ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Abstract
SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) infection is silent or benign in most infected individuals, but causes hypoxemic COVID-19 pneumonia in about 10% of cases. We review studies of the human genetics of life-threatening COVID-19 pneumonia, focusing on both rare and common variants. Large-scale genome-wide association studies have identified more than 20 common loci robustly associated with COVID-19 pneumonia with modest effect sizes, some implicating genes expressed in the lungs or leukocytes. The most robust association, on chromosome 3, concerns a haplotype inherited from Neanderthals. Sequencing studies focusing on rare variants with a strong effect have been particularly successful, identifying inborn errors of type I interferon (IFN) immunity in 1-5% of unvaccinated patients with critical pneumonia, and their autoimmune phenocopy, autoantibodies against type I IFN, in another 15-20% of cases. Our growing understanding of the impact of human genetic variation on immunity to SARS-CoV-2 is enabling health systems to improve protection for individuals and populations.
Keywords
Humans, COVID-19/genetics, SARS-CoV-2/genetics, Genome-Wide Association Study, Interferon Type I/genetics, Genomics, COVID-19 pneumonia, GWAS, SARS-CoV-2, inborn errors of immunity, type I interferons
Pubmed
Web of science
Open Access
Yes
Create date
23/05/2023 13:17
Last modification date
19/12/2023 7:29
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