Human Genomics of COVID-19 Pneumonia: Contributions of Rare and Common Variants.
Details
Serval ID
serval:BIB_FAD92BD97EE4
Type
Article: article from journal or magazin.
Publication sub-type
Review (review): journal as complete as possible of one specific subject, written based on exhaustive analyses from published work.
Collection
Publications
Institution
Title
Human Genomics of COVID-19 Pneumonia: Contributions of Rare and Common Variants.
Journal
Annual review of biomedical data science
Working group(s)
COVID Human Genetic Effort
ISSN
2574-3414 (Electronic)
ISSN-L
2574-3414
Publication state
Published
Issued date
10/08/2023
Peer-reviewed
Oui
Volume
6
Pages
465-486
Language
english
Notes
Publication types: Journal Article ; Review ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Publication Status: ppublish
Abstract
SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) infection is silent or benign in most infected individuals, but causes hypoxemic COVID-19 pneumonia in about 10% of cases. We review studies of the human genetics of life-threatening COVID-19 pneumonia, focusing on both rare and common variants. Large-scale genome-wide association studies have identified more than 20 common loci robustly associated with COVID-19 pneumonia with modest effect sizes, some implicating genes expressed in the lungs or leukocytes. The most robust association, on chromosome 3, concerns a haplotype inherited from Neanderthals. Sequencing studies focusing on rare variants with a strong effect have been particularly successful, identifying inborn errors of type I interferon (IFN) immunity in 1-5% of unvaccinated patients with critical pneumonia, and their autoimmune phenocopy, autoantibodies against type I IFN, in another 15-20% of cases. Our growing understanding of the impact of human genetic variation on immunity to SARS-CoV-2 is enabling health systems to improve protection for individuals and populations.
Keywords
Humans, COVID-19/genetics, SARS-CoV-2/genetics, Genome-Wide Association Study, Interferon Type I/genetics, Genomics, COVID-19 pneumonia, GWAS, SARS-CoV-2, inborn errors of immunity, type I interferons
Pubmed
Web of science
Open Access
Yes
Create date
23/05/2023 13:17
Last modification date
19/12/2023 7:29