Nanomotion technology: an innovative method to study cell metabolism in Escherichia coli, as a potential indicator for tolerance.

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Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_ED9633354811
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Nanomotion technology: an innovative method to study cell metabolism in Escherichia coli, as a potential indicator for tolerance.
Journal
Journal of medical microbiology
Author(s)
Aubry C., Kebbi-Beghdadi C., Luraschi-Eggemann A., Cathomen G., Cichocka D., Sturm A., Greub G.
Working group(s)
The Eradiamr Consortium
ISSN
1473-5644 (Electronic)
ISSN-L
0022-2615
Publication state
Published
Issued date
11/2024
Peer-reviewed
Oui
Volume
73
Number
11
Language
english
Notes
Publication types: Journal Article
Publication Status: ppublish
Abstract
Introduction. Antibiotic tolerance corresponds to the bacterial ability to survive a transient exposure to antibiotics and is often associated with treatment failure. Current methods of identifying tolerance based on bacterial growth are time-consuming. This study explores the use of a growth-independent method utilizing nanomotion technology to detect antibiotic-tolerant bacteria.Hypothesis. The nanomotion signal obtained from a nanomechanical sensor measures real-time metabolic activity and cellular processes and could provide valuable information about the tolerance of bacteria to antibiotics that cannot be detected by standard antibiotic susceptibility tests.Aim. The aim of this study is to investigate the potential of nanomotion technology to record antibiotic-tolerant bacteria.Methodology. We generated a slow-growing Escherichia coli strain by manipulating mazF expression levels and confirmed its viability by several standard methods. We subsequently measured its nanomotion and the nanomotion of the WT E. coli in the presence or absence of antibiotics. Supervised machine learning was employed to distinguish slow-growing from exponentially growing bacteria. Observations for bacterial nanomotions were confirmed by standard kill curves.Results. We distinguished slow-growing from exponentially growing bacteria using specific features from the nanomotion signal. Furthermore, the exposition of both growth phenotypes to polymyxin decreased the nanomotion signal indicating cell death. Similarly, when exponentially growing cells were exposed to ampicillin, an antibiotic whose efficacy depends on the growth rate, the nanomotion signal also decreased. In contrast, the nanomotion signal remained unchanged for slow-growing bacteria upon exposure to ampicillin. In addition, antibiotic exposure can cause bacterial elongation, in which the biomass of a cell increases without cell division. By overexpressing sulA, we mimicked antibiotic-induced elongation. Differences in the nanomotion signal were observed when comparing elongating and non-elongating phenotypes.Conclusion. This work shows that nanomotion signals entail information about the reaction to antibiotics that standard MIC-based antibiotic susceptibility tests cannot detect. In the future, nanomotion-based antibiotic tolerance tests could be developed for clinical use in chronic or relapsing infections.
Keywords
Escherichia coli/drug effects, Escherichia coli/metabolism, Anti-Bacterial Agents/pharmacology, Microbial Sensitivity Tests, Escherichia coli Proteins/metabolism, Escherichia coli Proteins/genetics, Drug Resistance, Bacterial, Nanotechnology/methods, DNA-Binding Proteins, Endoribonucleases, antibiotic, growth-independent method, nanomotion, rapid AST, tolerance
Pubmed
Create date
18/11/2024 14:55
Last modification date
19/11/2024 7:36
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