CACTUS: a computational framework for generating realistic white matter microstructure substrates.

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License: CC BY 4.0
Serval ID
serval:BIB_C2B0DFB109EF
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
CACTUS: a computational framework for generating realistic white matter microstructure substrates.
Journal
Frontiers in neuroinformatics
Author(s)
Villarreal-Haro J.L., Gardier R., Canales-Rodríguez E.J., Fischi-Gomez E., Girard G., Thiran J.P., Rafael-Patiño J.
ISSN
1662-5196 (Print)
ISSN-L
1662-5196
Publication state
Published
Issued date
08/2023
Peer-reviewed
Oui
Volume
17
Pages
1208073
Language
english
Notes
Publication types: Journal Article
Publication Status: epublish
Abstract
Monte-Carlo diffusion simulations are a powerful tool for validating tissue microstructure models by generating synthetic diffusion-weighted magnetic resonance images (DW-MRI) in controlled environments. This is fundamental for understanding the link between micrometre-scale tissue properties and DW-MRI signals measured at the millimetre-scale, optimizing acquisition protocols to target microstructure properties of interest, and exploring the robustness and accuracy of estimation methods. However, accurate simulations require substrates that reflect the main microstructural features of the studied tissue. To address this challenge, we introduce a novel computational workflow, CACTUS (Computational Axonal Configurator for Tailored and Ultradense Substrates), for generating synthetic white matter substrates. Our approach allows constructing substrates with higher packing density than existing methods, up to 95% intra-axonal volume fraction, and larger voxel sizes of up to 500μm <sup>3</sup> with rich fibre complexity. CACTUS generates bundles with angular dispersion, bundle crossings, and variations along the fibres of their inner and outer radii and g-ratio. We achieve this by introducing a novel global cost function and a fibre radial growth approach that allows substrates to match predefined targeted characteristics and mirror those reported in histological studies. CACTUS improves the development of complex synthetic substrates, paving the way for future applications in microstructure imaging.
Keywords
Monte-Carlo simulations, brain imaging, diffusion MRI, high packing density, microstructure imaging, numerical phantom, synthetic substrates, white matter
Pubmed
Web of science
Open Access
Yes
Create date
19/09/2023 9:14
Last modification date
25/01/2024 7:26
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